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Prediction of the Effect of Nucleotide Substitution Using Machine Learning
Šalanda, Ondřej ; Martínek, Tomáš (referee) ; Bendl, Jaroslav (advisor)
This thesis brings a new approach to the prediction of the effect of nucleotide polymorphism on human genome. The main goal is to create a new meta-classifier, which combines predictions of several already implemented software classifiers. The novelty of developed tool lies in using machine learning methods to find consensus over those tools, that would enhance accuracy and versatility of prediction. Final experiments show, that compared to the best integrated tool, the meta-classifier increases the area under ROC curve by 3,4 in average and normalized accuracy is improved by up to 7\,\%. The new classifying service is available at http://ll06.sci.muni.cz:6232/snpeffect/.
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Synthetic Data Set Generator for Traffic Analysis
Šlosár, Peter ; Juránková, Markéta (referee) ; Herout, Adam (advisor)
This Master's thesis deals with the design and development of tools for generating a synthetic dataset for traffic analysis purposes. The first part contains a brief introduction to the vehicle detection and rendering methods. Blender and the set of scripts are used to create highly customizable training images dataset and synthetic videos from a single photograph. Great care is taken to create very realistic output, that is suitable for further processing in field of traffic analysis. Produced images and videos are automatically richly annotated. Achieved results are tested by training a sample car detector and evaluated with real life testing data. Synthetic dataset outperforms real training datasets in this comparison of the detection rate. Computational demands of the tools are evaluated as well. The final part sums up the contribution of this thesis and outlines some extensions of the tools for the future.
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Classification of meadow vegetation in the Krkonoše Mts. using aerial hyperspectral data and support vector machines classifier
Hromádková, Lucie ; Kupková, Lucie (advisor) ; Potůčková, Markéta (referee)
Meadow vegetation in the Krkonoše Mountains National Park is classified in this master thesis using aerial hyperspectral data from sensor AISA and Support Vector Machines (SVM) and Neural Networks (NN) classification algorithms. The main goals of the master thesis are to determine the best settings of SVM parameters and to propose an ideal design for a training dataset for this classification algorithm and mapping of the meadows in the Krkonoše mountains. The criterion of the tests will be the result of classification accuracy (confusion matrices and kappa coefficient). The additional goal of the master thesis is to compare performances of both utilized classifiers, especially regarding the amount of training pixels necessary for successful classification of the mountainous meadow vegetation. Classification maps of the area of interest and Python scripts are the main outputs of the master thesis. These outputs will be handed over to the Administration of the Krkonoše Mountains National Park for further utilization in the monitoring and protecting these valuable meadow vegetation communities. Key words: hyperspectral data, AISA, Support Vector Machines, Neural Networks, training dataset, mountainous meadow vegetation
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Training and validation dataset optimization for Earth observation classification accuracy improvement
Potočná, Barbora ; Kupková, Lucie (advisor) ; Potůčková, Markéta (referee)
This thesis deals with training dataset and validation dataset for Earth observation classification accuracy improvement. Experiments with training data and validation data for two classification algorithms (Maximum Likelihood - MLC and Support Vector Machine - SVM) are carried out from the forest-meadow landscape located in the foothill of the Giant Mountains (Podkrkonoší). The thesis is base on the assumption that 1/3 of training data and 2/3 of validation data is an ideal ratio to achieve maximal classification accuracy (Foody, 2009). Another hypothesis was that in a case of SVM classification, a lower number of training point is required to achieve the same or similar accuracy of classification, as in the case of the MLC algorithm (Foody, 2004). The main goal of the thesis was to test the influence of proportion / amount of training and validation data on the classification accuracy of Sentinel - 2A multispectral data using the MLC algorithm. The highest overal accuracy using the MLC classification algorithm was achieved for 375 training and 625 validation points. The overal accuracy for this ratio was 72,88 %. The theory of Foody (2009) that 1/3 of training data and 2/3 of validation data is an ideal ratio to achieve the highest classification accuracy, was confirmed by the overal accuracy and...
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Classification of meadow vegetation in the Krkonoše Mts. using aerial hyperspectral data and support vector machines classifier
Hromádková, Lucie ; Kupková, Lucie (advisor) ; Potůčková, Markéta (referee)
Meadow vegetation in the Krkonoše Mountains National Park is classified in this master thesis using aerial hyperspectral data from sensor AISA and Support Vector Machines (SVM) and Neural Networks (NN) classification algorithms. The main goals of the master thesis are to determine the best settings of SVM parameters and to propose an ideal design for a training dataset for this classification algorithm and mapping of the meadows in the Krkonoše mountains. The criterion of the tests will be the result of classification accuracy (confusion matrices and kappa coefficient). The additional goal of the master thesis is to compare performances of both utilized classifiers, especially regarding the amount of training pixels necessary for successful classification of the mountainous meadow vegetation. Classification maps of the area of interest and Python scripts are the main outputs of the master thesis. These outputs will be handed over to the Administration of the Krkonoše Mountains National Park for further utilization in the monitoring and protecting these valuable meadow vegetation communities. Key words: hyperspectral data, AISA, Support Vector Machines, Neural Networks, training dataset, mountainous meadow vegetation
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Synthetic Data Set Generator for Traffic Analysis
Šlosár, Peter ; Juránková, Markéta (referee) ; Herout, Adam (advisor)
This Master's thesis deals with the design and development of tools for generating a synthetic dataset for traffic analysis purposes. The first part contains a brief introduction to the vehicle detection and rendering methods. Blender and the set of scripts are used to create highly customizable training images dataset and synthetic videos from a single photograph. Great care is taken to create very realistic output, that is suitable for further processing in field of traffic analysis. Produced images and videos are automatically richly annotated. Achieved results are tested by training a sample car detector and evaluated with real life testing data. Synthetic dataset outperforms real training datasets in this comparison of the detection rate. Computational demands of the tools are evaluated as well. The final part sums up the contribution of this thesis and outlines some extensions of the tools for the future.
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Prediction of the Effect of Nucleotide Substitution Using Machine Learning
Šalanda, Ondřej ; Martínek, Tomáš (referee) ; Bendl, Jaroslav (advisor)
This thesis brings a new approach to the prediction of the effect of nucleotide polymorphism on human genome. The main goal is to create a new meta-classifier, which combines predictions of several already implemented software classifiers. The novelty of developed tool lies in using machine learning methods to find consensus over those tools, that would enhance accuracy and versatility of prediction. Final experiments show, that compared to the best integrated tool, the meta-classifier increases the area under ROC curve by 3,4 in average and normalized accuracy is improved by up to 7\,\%. The new classifying service is available at http://ll06.sci.muni.cz:6232/snpeffect/.
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